Workflows

Taverna_logo All File Lister using external tool
Other

This workflow will list all files visitble to the workflow.

Uploaded 5 Feb 2014 15:25:49 UTC

Taverna_logo All File Lister using external tool
Other

This workflow will list all files visitble to the workflow.

Uploaded 6 Feb 2014 15:04:42 UTC

Taverna_logo Basic example R workflow
Other

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This workflow uses an R service running on localhost to calculate sin(0.45)

Uploaded 22 May 2014 10:22:16 UTC

Taverna_logo BioVeL ESW STACK - ENM Statistical Workflow with raster stack computation
Other

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The ENM Statistical Stack Workflow (ESW STACK) allows the computation of the extent, intensity and a cummulated potential species dictribution through computation of a average sum layer from the input raster layers using the R statistical environment (R Core Team 2013). The sum layer is computed from
...

Uploaded 23 Jan 2014 14:36:10 UTC

Taverna_logo Define with PartitionFinder, infer and validate Phylogeny - short run
Phylogenetics

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Phylogenetic inference with MrBayes. The the model of evolution is defined with the help of PartitionFinder, inference and test of MCMC convergence (GEOKS) and fit of the model on the data (Posterior Predictive test)

Uploaded 22 Jan 2014 10:54:52 UTC

Taverna_logo Define with PartitionFinder, infer and validate Phylogeny - short run
Other

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Phylogenetic inference with MrBayes. The the model of evolution is defined with the help of PartitionFinder, inference and test of MCMC convergence (GEOKS) and fit of the model on the data (Posterior Predictive test)

Uploaded 24 Jan 2014 09:20:48 UTC

Taverna_logo Ecological niche modelling workflow
Ecological Niche Modelling

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This workflow takes as input a file containing species occurrence points to create a model with the openModeller Web Service. Algorithm, environmental layers and mask are selected during the workflow. The model is tested (internal test and optional cross validation external test) and then projected
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Uploaded 30 Jan 2014 10:58:52 UTC

Taverna_logo Ecological niche modelling workflow / use BioSTIF at EGI-server - only http
Ecological Niche Modelling

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This workflow takes as input a file containing species occurrence points to create a model with the openModeller Web Service. Algorithm, environmental layers and mask are selected during the workflow. The model is tested (internal test and optional cross validation external test) and then projected
...

Uploaded 6 May 2014 10:23:10 UTC

Taverna_logo Ecological niche modelling workflow using EGI
Ecological Niche Modelling

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This workflow takes as input a file containing species occurrence points to create a model with the openModeller Web Service. Algorithm, environmental layers and mask are selected during the workflow. The model is tested (internal test and optional cross validation external test) and then projected
...

Uploaded 6 May 2014 12:38:16 UTC

Taverna_logo Multi-interaction
Other

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A workflow with multiple interactions that can appear in a random order

Uploaded 3 Feb 2014 21:06:22 UTC

Taverna_logo Partitioning environmental sequencing data using categorical and phylogenetic information using PhyloH with parsing Qiime
Phylogenetics

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Partitioning environmental sequencing data using categorical and phylogenetic information using PhyloH .
The WF need a tree in newick format, a samplefile that show the where the leaf of the tree are found in the different sample and how many time, and a grouping file where the different sample are
...

Uploaded 22 Jan 2014 12:05:19 UTC

Taverna_logo Partitioning environmental sequencing data using categorical and phylogenetic information using PhyloH with parsing Qiime
Phylogenetics

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Partitioning environmental sequencing data using categorical and phylogenetic information using PhyloH .
The WF need a tree in newick format, a samplefile that show the where the leaf of the tree are found in the different sample and how many time, and a grouping file where the different sample are
...

Uploaded 22 Jan 2014 22:58:39 UTC

Taverna_logo Partitioning environmental sequencing data using categorical and phylogenetic information using PhyloH with parsing Qiime
Phylogenetics

BioVeL avatar

Partitioning environmental sequencing data using categorical and phylogenetic information using PhyloH .
The WF need a tree in newick format, a samplefile that show the where the leaf of the tree are found in the different sample and how many time, and a grouping file where the different sample are
...

Uploaded 22 Jan 2014 23:16:20 UTC

Taverna_logo Select Model For Me with components
Phylogenetics

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Phylogenetic inference with MrBayes. The the model of evolution is defined with the help of PartitionFinder, inference and test of MCMC convergence (GEOKS) and fit of the model on the data (Posterior Predictive test)

Uploaded 22 Jan 2014 10:50:20 UTC

Taverna_logo UTF-8 test
Other

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Reads UTF-8 data and displays it in interactions

Uploaded 6 Aug 2014 13:40:06 UTC

Taverna_logo Various output types
Other

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This workflow has various outputs types - a list, an XML text, a JSON text and an image.

Uploaded 21 Jan 2014 18:37:08 UTC
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BioVeL has received funding from the European Union's Seventh Framework Programme for research, technological development and demonstration under grant agreement no. 283359.

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